Showing posts with label science blog ideas. Show all posts
Showing posts with label science blog ideas. Show all posts

Thursday, July 25, 2019

Disease Post: Rabies

Welcome to the Rabies post!

Background:

Rabies is caused by a virus from the rhabdovirus family and is bullet-shaped. The virus has an envelope (a double layer of lipids like those that form our cell membranes). Rabies' genetic material is single-stranded RNA.
Transmisson electron microscopy picture of a rhabdovirus. Image from the Wellcome Collection.

Brief review: in humans, our genetic material is double-stranded DNA (deoxyribonucleic acid) that is kept in the nucleus of our cells. Kind of like the control center. When we need to make a protein, the DNA strands unwind and we have cellular proteins that make a copy of the DNA which is called RNA. Human RNA (ribonucleic acid) is always single-stranded. This strand of RNA then exits the nucleus and into the cytoplasm of the cell where other proteins translate the RNA instructions into a protein.

Since rabies contains single-stranded RNA, it can enter the cytoplasm of our cells and use our cell's machinery to make more viruses.

Rabies is a disease that is present all around the world (except in Antarctica) and has been around for thousands of years (at least). It is thought to have evolved with dogs and wolves as those are usually the most easily affected and infected animals. Most cases in humans occur in Asia and Africa, but it is regularly seen in Europe, Australia, and the Americas, too. In places where dog vaccination is common (like the US), fewer dogs are problems and bats become more likely to spread the disease. There are also vaccination programs in wild animals like foxes and raccoons via food baits, which is great, but there aren't any programs that can easily vaccinate bats, to my knowledge.

How is it spread?

Rabies is often found in wild animals like raccoons, foxes, coyotes, and bats. Domestic animals, like dogs and cats can become infected. And of course, humans. To my knowledge, rabies only infects mammals.

Rabies is spread through the saliva of an infected mammal and enters the new host through broken skin. Infections are usually caused by a bite, but can be transmitted by a scratch.

The virus enters the wound and moves into the local nerve cells or neurons. Once it is in the neurons, it can hide really well from your immune system (obviously your immune system should not normally attack your nervous system because it is so important for all of your normal functions). From the local nerves it makes its way from nerve to nerve to reach the central nervous system (your spinal cord and brain). After that, the virus travels down to the salivary glands where they can shed into the saliva and try to spread further! (Side note: viruses when they multiply are said to be "shed" or released, usually in very large numbers. This is how they enter the environment and spread to other hosts.)

One lucky thing about this virus is that it moves pretty slowly, depending on how far away it is from the central nervous system when it enters the body. For example, if you are bitten on your calf, you will have a lot more time before the virus reaches your brain than someone who is bitten on the neck. Viral load, or how many viruses enter the wound, also plays a role in how quickly it moves. If only a few viruses enter a wound, it will take longer to get to the brain. It's slow movement is important for treatment, which we will discuss later.

Symptoms:

According to the WHO, "incubation period for rabies is typically 2–3 months but may vary from 1 week to 1 year, dependent upon factors such as the location of virus entry and viral load."
Rabid dog. Image from the Wellcome Collection.

Early symptoms are pretty standard: fever, weakness, headache, and body aches. Oftentimes, people will feel tingling, prickling, and/or burning sensations as the virus spreads through the nerve cells. Hydrophobia (fear of water) and sometimes photophobia (fear of light or sensitivity to light) are later symptoms.

There are two forms of the disease: paralytic rabies and furious rabies. Furious rabies is the rabies most of us are familiar with. Furious rabies is a faster moving manifestation of the disease. It is characterized by hyperactivity, excitability, hydrophobia, agitation, confusion, and insomnia.

What is super interesting to me is the hydrophobia. The people who experience this (and not all rabies-infected people/animals do) have pain when they try to swallow. This is a viral strategy (so to speak, they aren't alive) to help spread it. The virus is present in saliva and the virus wants to get out, not be swallowed. Being swallowed defeats the virus' purpose. The virus affects an animal's ability to swallow in order to spread. Much like a cold virus will cause a person to sneeze so that virus can be spread in the air to new hosts.

In paralytic rabies, the disease is slower and not as exciting, so to speak. As the virus spreads, the person becomes paralyzed starting at the site of infection and slowly spreading until the person is completely paralyzed and falls into a coma.

No matter which form you get, the ultimate outcome is almost always death. According to the CDC, "less than 20 cases of human survival from clinical rabies have been documented" and only a few of the survivors had not had any preventative treatment (like the rabies vaccine) or treatment after they were exposed. This shows just how deadly this virus is. It has been noted throughout much of history that if a victim reaches the hydrophobia stage of disease, the outcome will be death.

Prevention and Treatment:

For those of you with dogs, you probably know that rabies vaccines are routine. Generally, they receive the vaccine as puppies and then have a booster every three years, though some areas require a booster every year. Dogs are often vaccinated against rabies, which is good because most cases of human rabies are from domestic dogs. Humans who work closely with animals, like veterinary doctors and staff, or laboratory staff that work with animals may receive the vaccine as prevention. Vaccination against rabies is not standard in humans, though.

If you get bitten or scratched by an animal that can carry rabies, what do you do? Seek care as soon as you can, especially if you do not know the animal or their health state. Cleaning the wound very well can help a person's chances. Normally, people who may have been infected receive the rabies vaccine because the virus moves slowly enough for your body to react to the vaccine and then to react to the actual virus to clear it. Your body just needs a little help from that vaccine. If someone is further along or more at-risk, they may receive rabies immunoglobulin. Immunoglobulin are antibodies specific to a disease, rabies in this case. Antibodies are produced by your immune system to help target and inactivate viruses (or bacteria, and so on). The immunoglobulin is produced in a laboratory and given to people to help their immune system combat the disease until that person's own immune system can catch up and start making its own antibodies.

Miscellaneous Information: 

If you are interested in rabies, I highly recommend the book Rabid: A Cultural History of the World's Most Diabolical Virus by Bill Wasik and Monica Murphy. My favorite parts were about how the rabies virus may have helped inspire the stories of werewolves and vampires. Both horror figures are strongly associated with wolves/dogs. Vampires are also associated with bats. Both involve biting to spread the conditions. Werewolves are often associated with rage and being unpredictable and uncontrollable. And then vampires don't do well (or can't exist at all) in sunlight--photophobia. Many classic vampires also can't cross water--hydrophobia.

The book also goes into the history of the disease, old time treatments (like drinking something containing "the hair of the dog that bit you," which is a common phrase even now) and how it has caused people throughout time to create laws to prevent the spread of rabies.

That is about it for rabies! Please let me know if you have any questions or if I have any information incorrect! Thanks for reading!

And a very special thank you to my friend, Veronica! She edited this post and helped me find things that needed more information or clarification. So thank you for your help!

Sources:
Virology: Principles and Applications by John Carter and Venetia Saunders
World Health Organization
Centers for Disease Control and Prevention
Rabid: A Cultural History of the World's Most Diabolical Virus by Bill Wasik and Monica Murphy
Medical Microbiology 6th Edition by Patrick R. Murray, Ken S. Rosenthal, and Michael A. Pfaller
WebMD Pet Vaccines: Schedules for Cats and Dogs

Sunday, June 23, 2019

Disease Post: Smallpox

Greetings and welcome to my first (hopefully of many) science posts.

If you read my last post, I was inspired by the second half of the vaccine episode of the podcast This Podcast Will Kill You (which is an awesome podcast and everyone should listen to it). In the second part of the vaccine episodes, they discussed that people not believing science and scientific research is because scientists don't make information accessible and easy to understand. I agree and think this is a huge shortcoming in the field of science. To that end, I would like to contribute to the scientific knowledge that is available out there.

Let me start with a little introduction and background:

I have my Bachelor's degree in Biology with a minor in Chemistry. I did a decent amount of focus on molecular biology at this time. I have my Master's in Microbiology and infectious diseases are certainly my passion. Currently I am taking steps (slow baby steps, but steps) towards medical school and on to be a doctor who specializes in infectious diseases (fingers crossed). Because that would be the most amazing thing ever. I have a pretty good science background. I have worked in a lab for several years and have background as a tutor. I am hoping that these things will enable me to take on this blog project.

However, my background is almost entirely in Biology and Microbiology. I can get by Chemistry alright, but that is about the extent of what I know. So as much as I wish I could educate on topics like global warming, I can't and don't plan to try unless I get help from someone who knows the field. So that means that I will end up focusing on diseases (at least to start). I do have an older post about vaccination here: Why You Should Vaccinate, and I may do more like that in the future. Right now this is a bit of a pet project and we will see how it goes.

And now for:
Disease Post One: Smallpox!

A tiny bit of background information: what is a virus? The Merriam-Webster dictionary says a virus is
     any of a large group of submicroscopic infective 
     agents that are usually regarded as nonliving 
     extremely complex molecules, that typically 
     contain a protein coat surrounding an RNA or DNA 
     core of genetic material but no semipermeable 
     membrane, that are capable of growth and 
     multiplication only in living cells, and that 
     causes very important diseases in humans, 
     animals, and plants

Basically, this means that there are several different kinds and families and types of viruses. They might have DNA or RNA genetic material which may be single- or double-stranded (which will affect how they use the host cell to make more copies). Some have an envelope around them that is basically the same as our cell's membranes. Some do not have a membrane. These will affect how a virus enters and exits a host cell and provide some level of protection/preservation when the virus is not inside a host. It is up for debate whether viruses are actually alive or not. That's not something we are going to get into here. Viruses are mostly considered non-living because of one important feature: they need another living cell in order to multiply their numbers and spread. 

Viruses are the source of many different diseases, some are lethal and others are minor. Some can even cause cancer. I'm going to underline this next point: viruses cannot be treated with antibiotics! Antibiotics treat bacterial infections, not viral. There are anti-viral medications out there for serious infections, but viruses can be harder to treat because they like to hide in our cells.

Smallpox is a disease caused by a virus, namely Variola major. (There is a less common and less lethal virus that causes smallpox called Variola minor.) The variola viruses are double-stranded DNA viruses so their genetic material is like ours! They are very large viruses because they have to carry a bunch of machinery around due to the fact that they replicate their DNA in the cytoplasm of human cells. Since we, as humans, replicate out DNA in the nucleus of our cells, the virus can't hijack our own machinery to aid them. Therefore, they carry their tools with them!

Smallpox was common around the world for thousands of years. It was officially eradicated in 1980. Smallpox virus only has one host: humans. Which made it a good target for eradication because it cannot be hiding somewhere in the environment or in an animal host, waiting to re-establish itself in the human population. Once the vaccination programs spread, the virus had no where to go, and now its gone! The only smallpox left in the world are in a couple of laboratories (both in the US and in Russia because it is a great pick for bioterrorism and biowarfare--maybe an idea for a future post as I actually took a course on that very thing during my Master's).

While smallpox seems less relevant today, it is a historically important disease that killed loads of people. According to the CDC (Center for Disease Control): "On average, 3 out of every 10 people who got it died. Those who survived were usually left with scars." It is also where vaccines started. I won't get too into all of the history here, but in the late 1700's Edward Jenner used a live vaccinia virus (which causes cowpox, a virus/disease related to smallpox) to inoculate or infect a patient. The reason for this was that he noticed that milkmaids often didn't get smallpox if they had contracted the much milder cowpox. His methods worked (luckily since he used human subjects in the days before scientific ethics was a thing). And the word "vaccine" comes from "vacca," which is latin for "cow!"

Edward Jenner vaccinating a child. Image from Wellcome Collection.


How is it spread? 

Smallpox initially infects the respiratory system and so it is usually transmitted in the air from one person to another. It can also be spread through touch because the scabs and sores contain live virus, but that is less common. Namely, it happened when the infected person sneezed or coughed virus into the air.

Once smallpox is in the body, it incubates (develops, multiplies) for several days, the CDC estimates between 7 and 19 days. During this time, there may not be any symptoms present and the person probably won't know he or she is sick.

Symptoms: 
  • First symptoms are pretty common for diseases: fever and body aches. Some patients may experience vomiting. The CDC states that this stage is not usually contagious, but it can be.
  • Next the patient will start to develop a rash in the mouth and tongue. This is when patients are most contagious! That is part of why this disease is dangerous and easy to spread: people around you don't know you have smallpox!
  • Following this stage, the sores in the mouth will begin to fade to be replaced by the signature skin sores. 
  • The sores become pustules (bumps filled with fluid) form that have a characteristic dent in the middle. 
  • The pustules will start to scab over and the scabs eventually fall off. This happens after about 3 weeks of obvious disease (from the mouth sores). And remember, the pustules and scabs are also contagious. Once the scabs are all gone, the person is not contagious anymore.
This highlights another reason this disease is important: if you got smallpox (and almost everyone did before vaccines), you were sick and contagious for about a month. If you survived. Remember the mortality rate was about 33%. Meaning that about a third of the people who were infected would die of the disease.

If the virus moved to the eye, the patient could become blind.

According to the WHO, "Between 65–80% of survivors are marked with deep pitted scars (pockmarks), most prominent on the face."

One upside: if you survived, you had life-long immunity! This means you cannot get smallpox twice!
Smallpox rash and pustules. Image from Wellcome Collection.


Prevention and Treatment:
These are not super important now that smallpox is eradicated, but there are still stocks of smallpox vaccine out there. Military personnel are the most common people vaccinated these days, and not even all of them receive the vaccine. I believe it is available to medical professionals in some places, but many never receive it. The main reason for this is that the vaccine is still a live virus (a weaker vaccinia virus that was developed in labs for the vaccine for many generations) and can cause people nearby to become infected by the vaccine strain. When a person gets the vaccine, they are supposed to avoid human contact for a while until the vaccine site heals. (I know the old vaccines gave a pox mark/pock mark and pustule, so you would have to wait for the scab to fall off, just like with smallpox. I'm unsure if the current vaccines are the same, but I know they are still contagious.)


As for treatment, there are a couple options, just in case! None of these antivirals (medication used to treat viruses) have been used to treat smallpox because there are no more cases, but they are: tecovirimat (TPOXX), cidofovir and brincidofovir.

That's about it for smallpox! I hope you liked it and learned something. And if I missed anything or got anything wrong, please, please let me know so that I can correct it! Feel free to reach out with questions or if something needs clarification. Thanks!

Sources:
Centers for Disease Control and Prevention
World Health Organization
Medical Microbiology, 6th edition by Patrick R. Murray, Ken S. Rosenthal, and Michael A. Pfaller
Mayo Clinic

Also, thanks so much to my friend, Veronica, for helping me edit this post!

Monday, June 3, 2019

May 2019 Wrap Up

May has been a pretty crazy month for me. I got to go to Disneyland at the beginning, which was amazing. About a week ago (or so), I was in Pittsburgh which was another new place for me. Then June 1st was the anniversary of Sprite's death and the day that I left to visit New Mexico. That's why this post is a little bit late, sorry!

However, I read several great books last month!

Title: The Overdue Life of Amy Byler
Author: Kelly Harms

Thoughts: I believe this was from the Amazon Prime First Reads. While on vacation I was craving some contemporary fiction so I picked this one out of my Kindle library. It is about a woman who has been abandoned by her husband and forced to find a way to be a single mom. But when he comes back years later, she's not sure she wants to share her life. Her friends help encourage her to allow her ex to take care of the kids while she goes to a conference in New York and re-discovers herself on her "Momspringa."

I wasn't sure how much I would like this book, but I found it surprisingly enjoyable. It's always good to remember that there is more to life than just the hard stuff!

Rating: 4 out of 5 stars


Title: Leah on the Offbeat
Author: Becky Albertalli

Thoughts: A young adult contemporary this time by an author I have loved in the past. This is the story of high school student Leah and how she navigates her way through trying to be a friend, drummer, daughter, student, artist, and maybe girlfriend? As high school is drawing to an end, she knows her life will be changing forever, whether she likes it or not.

I really enjoyed her book the Upside of Unrequited and I liked Simon vs. the Homo Sapiens Agenda and I liked this one, too. I was so heartbroken for her when she found her prom dress and her mom was less than enthusiastic. But I liked the story and it was a great vacation read.

Rating: 4 out of 5 stars


Title: Aru Shah and the Song of Death
Author: Roshani Chokshi
Narrator: Soneela Nankani

Thoughts: Book two of the Pandava Quartet and I enjoyed it just as much as the first one. The adventures of Aru and Mini continue. They meet another Pandava sister, Brynne, and other allies and must recover the bow and arrow for the god of love before they are banned from the Otherworld forever.

I am generally a sucker for mythology and mythological re-tellings. While my knowledge of Hindu mythologies and the Pandava stories are not the strongest, this series has been great so far.

Rating: 4 out of 5 stars


Title: There's Something About Sweetie
Author: Sandhya Menon

Thoughts: Another young adult contemporary that I ordered as soon as it came out. This is about Ashish who is still recovering from a bad breakup and allows his parents to arrange some dates with an Indian-American girl of their choosing. And they choose Sweetie who is an accomplished singer, great student, and a track star. And she is fat. She is ok with all of these things, but she is never sure if other people are. Like her mother. Despite everything, Sweetie and Ashish find love.

This was a sweet, feel-good book. I really liked her book From Twinkle, With Love (though I didn't enjoy When Dimple Met Rishi as much). I think Sandhya Menon's books just keep getting better. And this is a wonderful summer romantic read!

Rating: 4 out of 5 stars


Title: I'm Fine and Neither Are You
Author: Camille Pagán

Thoughts: Penelope is left reeling from the death of her best friend, who seemed like she had the perfect life. As Penelope discovers that this is not the case, she decides it's time to fix things in her own hectic life. And she has a list and a husband who is willing to help work on their marriage and help encourage Penelope to be honest about what she needs and how she feels. While the tasks often seem insurmountable to her, she does start managing to make small changes and improvements to her life.

I got this for my Kindle on sale a while back and picked it up in the midst of my book hangover from The Overdue Life of Amy Byler (which was another book hangover pick from Matchmaking for Beginners that I read a few months ago and wanted more of). I'm starting to see weird patterns in my adult contemporary novel picks! But I did enjoy this one and I cried a few times. A lot of it felt like it could be very real and it made me think.

Rating: 3 1/2-4 stars out of 5


Did I give all of my reads this month 4 out of 5 stars (or nearly)? Yes. It was a good month for reading! Even if I didn't finish my Biology MCAT book like I promised myself. Sometimes that's just the way life goes. I didn't feel like studying while I was on my vacations and ultimately I am very happy with the books I got to read this month.

I also have an idea rolling around in my head for this blog. I am passionate about science and I have posted a couple little things in the past that are science related. I was listening to a podcast episode recently (the second half of the vaccine episode of This Podcast Will Kill You, which is an awesome podcast and you should totally listen to it). They talked some about science and how the general public doesn't understand science and how scientists make information inaccessible to people who aren't, well, scientists. It got me thinking that I might want to contribute to the science community. Maybe I can help make some of this knowledge more accessible? I wish I were an expert on all science (ie: global warming), but I'm not. I do know infectious diseases though. I'm not sure if there is much interest out there for this, but it is something I have been thinking about trying. I will try to start putting something together within the next month or two. Please let me know if you have questions or suggestions!

I can't recall any other big news or developments in my life. Except maybe that I got to see the new Aladdin movie and I recommend it!

Happy summer! Hope you read something amazing!